About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG01617.1
RPACG01618.1
RPACG01619.1
RPACG01620.1SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7
RPACG01621.1
RPACG01622.1
RPACG01623.1TRANSDUCIN-LIKE ENHANCER PROTEIN
RPACG01624.1PROLINE-RICH PROTEIN PRCC
RPACG01625.1
RPACG01626.1
RPACG01627.1MISEXPRESSION SUPPRESSOR OF RAS 6
RPACG01628.1MISEXPRESSION SUPPRESSOR OF RAS 6
RPACG01629.1
RPACG01630.1
RPACG01631.1
RPACG01632.1
RPACG01633.1
RPACG01634.1
RPACG01635.1
RPACG01636.1
RPACG01637.1
RPACG01638.1
RPACG01639.1
RPACG01640.1POTE ANKYRIN DOMAIN
RPACG01640.2
RPACG01641.1
RPACG01642.1EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP
RPACG01643.1
RPACG01644.1
RPACG01644.2
RPACG01644.3
RPACG01645.1
RPACG01646.1
RPACG01646.2
RPACG01647.1
RPACG01648.1
RPACG01649.1POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP
RPACG01650.1BTB/POZ DOMAIN-CONTAINING
RPACG01650.2BTB/POZ DOMAIN-CONTAINING
RPACG01651.1CYTOCHROME C OXIDASE POLYPEPTIDE
RPACG01652.1JTB PROTEIN-RELATED
RPACG01653.1HELIX LOOP HELIX PROTEIN 21-RELATED
RPACG01653.2
RPACG01653.3
RPACG01654.1SUPERKILLER 3 PROTEIN-RELATED
RPACG01655.1SERINE/THREONINE-PROTEIN KINASE
RPACG01656.1
RPACG01657.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG01658.1
RPACG01659.1
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