About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG01356.1
RPACG01357.1
RPACG01358.1
RPACG01359.1TRANSFERASE, PUTATIVE-RELATED
RPACG01360.1OS10G0105400 PROTEIN
RPACG01361.1STANNIOCALCIN
RPACG01362.1
RPACG01363.1OS10G0105400 PROTEIN
RPACG01364.1OS10G0105400 PROTEIN
RPACG01364.2
RPACG01365.1OS10G0105400 PROTEIN
RPACG01366.1OS10G0105400 PROTEIN
RPACG01367.1
RPACG01368.1B-BOX DOMAIN CONTAINING
RPACG01368.2
RPACG01369.1
RPACG01370.1RIIA DOMAIN-CONTAINING PROTEIN 1
RPACG01371.1
RPACG01372.1-
RPACG01373.1METHYLTRANSFERASE-RELATED
RPACG01374.1BETA LACTAMASE DOMAIN
RPACG01375.1MITOCHONDRIAL FISSION PROCESS PROTEIN 1
RPACG01376.1ATP-DEPENDENT RNA HELICASE
RPACG01377.1AMINO ACID TRANSPORTER
RPACG01378.1
RPACG01379.1
RPACG01380.1
RPACG01381.1
RPACG01382.1-
RPACG01383.1COLLAGEN ALPHA
RPACG01384.1
RPACG01385.1COLLAGEN ALPHA
RPACG01386.1COLLAGEN ALPHA
RPACG01387.1
RPACG01388.1COLLAGEN ALPHA
RPACG01388.2
RPACG01389.1
RPACG01390.1
RPACG01391.1PROTEIN CBG10425
RPACG01392.1
RPACG01393.1
RPACG01394.1
RPACG01395.1AGAP004733-PA
RPACG01396.1
RPACG01397.1
RPACG01398.1
RPACG01399.1PR DOMAIN ZINC FINGER PROTEIN
RPACG01400.1
RPACG01401.1DNAJ HOMOLOG SUBFAMILY B MEMBER 9
RPACG01402.1CEREBLON
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