Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Riftia (Genus); Riftia pachyptila (Species)
Riftia pachyptila Jones, 1981
1. Jones M L. Riftia pachyptila, new genus, new species, the vestimentiferan worm from the Galapagos Rift geothermal vents (Pogonophora)[J]. 1981. (Jones et al., 1981)
Galapagos Rift, Rose Garden geothermal vent 0.8042 (0° 48' 15" N) -86.2247 (86° 13' 29" W), 2,450 meters
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Riftia pachyptila | Annelida | Cold seep, Deep sea, Vent field | 2,514 | hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W) | 6426 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
|---|---|---|---|---|---|---|---|---|---|---|---|
| - | 554Mb | Contig | 2023 | - | QUEEN MARY UNIVERSITY OF LONDON | PRJEB55047 | 99.37 | 2870 | 40.49 | 29.99 | 37,037 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid worms | nature communications | 37198188 |
| Gene ID | Description |
|---|---|
| RPACG05899.1 | - |
| RPACG05900.1 | - |
| RPACG05901.1 | - |
| RPACG05902.1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| RPACG05903.1 | - |
| RPACG05903.2 | - |
| RPACG05904.1 | THUMP DOMAIN CONTAINING PROTEIN 1-RELATED |
| RPACG05905.1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
| RPACG05906.1 | SGT1 PROTEIN HSGT1 SUPPRESSOR OF GCR2 |
| RPACG05907.1 | LATE ENDOSOMAL/LYSOSOMAL MP1 INTERACTING PROTEIN |
| RPACG05908.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| RPACG05909.1 | VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE |
| RPACG05910.1 | - |
| RPACG05911.1 | - |
| RPACG05912.1 | VITAMIN K-DEPENDENT GAMMA-CARBOXYLASE |
| RPACG05913.1 | YALI0E18722P |
| RPACG05914.1 | - |
| RPACG05915.1 | - |
| RPACG05916.1 | - |
| RPACG05917.1 | - |
