About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG14783.1MATING RESPONSE PROTEIN POI2
RPACG14784.1MITOCHONDRIAL DIVISION PROTEIN 1-RELATED
RPACG14785.1TYPE-1 ANGIOTENSIN II RECEPTOR-ASSOCIATED PROTEIN
RPACG14786.1
RPACG14787.1
RPACG14788.1
RPACG14789.1
RPACG14790.1
RPACG14790.2
RPACG14790.3
RPACG14790.4
RPACG14791.1UNCHARACTERIZED
RPACG14792.1
RPACG14793.1EXS-RELATED PROTEIN
RPACG14794.1
RPACG14795.1
RPACG14796.1
RPACG14797.1
RPACG14798.1
RPACG14799.1
RPACG14800.1
RPACG14801.1
RPACG14802.1
RPACG14803.1
RPACG14804.1
RPACG14805.1FTP DOMAIN-CONTAINING PROTEIN
RPACG14806.1
RPACG14807.1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
RPACG14808.1
RPACG14809.1ALANYL-TRNA SYNTHETASE
RPACG14810.1UNCHARACTERIZED
RPACG14811.1LEISHMANOLYSIN-LIKE PEPTIDASE
RPACG14812.1LEISHMANOLYSIN-LIKE PEPTIDASE
RPACG14813.1
RPACG14814.1ZINC FINGER AND SCAN DOMAIN-CONTAINING
RPACG14815.1PKSB
RPACG14816.1
RPACG14816.2
RPACG14817.1
RPACG14818.1
RPACG14819.1UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN
RPACG14819.2
RPACG14820.1PROTEIN CBG05131
RPACG14821.1PROTEIN CBG05131
RPACG14821.2
RPACG14822.1RIBOSOMAL PROTEIN L2
RPACG14823.1ATP-DEPENDENT RNA HELICASE DBP3
RPACG14824.1CRUMBS FAMILY MEMBER
RPACG14825.1FTP DOMAIN-CONTAINING PROTEIN
RPACG14826.1
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