About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG13980.1
RPACG13980.2
RPACG13981.1
RPACG13982.1MIP11318P
RPACG13983.1CALCYPHOSIN
RPACG13984.1CALCYPHOSIN
RPACG13985.1FRIZZLED
RPACG13986.1
RPACG13987.1
RPACG13988.1
RPACG13989.1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
RPACG13990.1
RPACG13991.1
RPACG13992.1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
RPACG13993.1CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A
RPACG13994.1
RPACG13995.1
RPACG13996.1
RPACG13997.1
RPACG13998.1
RPACG13999.1ARYLACETAMIDE DEACETYLASE
RPACG14000.1CALPONIN
RPACG14001.1
RPACG14002.1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
RPACG14003.1DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED
RPACG14004.1SPERM-SPECIFIC FAMILY, CLASS Q
RPACG14005.1TETRASPANIN
RPACG14006.1RIKEN CDNA D130052B06 GENE
RPACG14007.1
RPACG14008.1TETRASPANIN
RPACG14009.1TETRASPANIN
RPACG14010.1
RPACG14011.1TETRASPANIN
RPACG14012.1TETRASPANIN
RPACG14013.1
RPACG14014.1
RPACG14015.1
RPACG14016.1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
RPACG14017.1
RPACG14018.1
RPACG14019.1
RPACG14020.1
RPACG14021.1
RPACG14022.1HILLARIN
RPACG14023.1
RPACG14024.1
RPACG14025.1
RPACG14026.1
RPACG14027.1HILLARIN
RPACG14028.1
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