About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG12400.1HILLARIN
RPACG12401.1HILLARIN
RPACG12402.1OS-9-RELATED
RPACG12403.1
RPACG12404.1
RPACG12405.1VOLTAGE-GATED POTASSIUM CHANNEL
RPACG12406.1SI:CH211-161H7.5-RELATED
RPACG12407.1
RPACG12408.1SPONDIN
RPACG12409.1SI:CH211-266K2.1
RPACG12410.1
RPACG12411.1NUCLEOLAR GTP-BINDING PROTEIN 1
RPACG12412.1
RPACG12413.1
RPACG12414.1
RPACG12415.1
RPACG12416.1METHIONINE SULFOXIDE REDUCTASE
RPACG12417.1CADHERIN DOMAIN-CONTAINING PROTEIN
RPACG12418.1
RPACG12419.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG12420.1
RPACG12421.1
RPACG12422.1
RPACG12423.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG12424.1
RPACG12425.1
RPACG12426.1
RPACG12427.1
RPACG12428.1
RPACG12429.1
RPACG12430.1STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER
RPACG12431.1
RPACG12431.2
RPACG12431.3
RPACG12432.1
RPACG12433.1NITRATE, FORMATE, IRON DEHYDROGENASE
RPACG12434.1G BETA-LIKE PROTEIN GBL
RPACG12435.1NEUROTRANSMITTER GATED ION CHANNEL
RPACG12436.1
RPACG12437.1SI:CH211-266K2.1
RPACG12438.1
RPACG12439.1
RPACG12440.1
RPACG12441.1
RPACG12442.1
RPACG12442.2
RPACG12443.1
RPACG12444.1
RPACG12445.1G-PROTEIN COUPLED RECEPTOR 158-RELATED
RPACG12446.1NEUROTRANSMITTER GATED ION CHANNEL
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