About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG12357.1CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE
RPACG12358.1
RPACG12359.1PERIAXIN/AHNAK
RPACG12360.1GLYCOSYL HYDROLASE-RELATED
RPACG12361.1ZINC FINGER PROTEIN 183
RPACG12362.1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
RPACG12363.1
RPACG12364.1GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
RPACG12365.1ABL INTERACTOR FAMILY MEMBER
RPACG12366.1
RPACG12367.1ANION EXCHANGE PROTEIN
RPACG12368.1UNCHARACTERIZED
RPACG12369.1
RPACG12369.2
RPACG12370.1
RPACG12371.1
RPACG12372.1
RPACG12373.1MOLTING PROTEIN MLT-4
RPACG12374.1
RPACG12375.1YEATS DOMAIN
RPACG12376.1
RPACG12377.1
RPACG12378.1SOLUTE CARRIER FAMILY 17
RPACG12379.1SERINE PROTEASE INHIBITOR, SERPIN
RPACG12380.1SERINE PROTEASE INHIBITOR, SERPIN
RPACG12380.2
RPACG12381.1
RPACG12381.2
RPACG12381.3
RPACG12381.4
RPACG12382.1
RPACG12383.1ETS
RPACG12384.1
RPACG12385.1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
RPACG12386.1
RPACG12386.2
RPACG12386.3
RPACG12387.1
RPACG12388.1
RPACG12389.1
RPACG12390.1
RPACG12391.1
RPACG12392.1HILLARIN
RPACG12393.1HILLARIN
RPACG12394.1HILLARIN
RPACG12395.1HILLARIN
RPACG12396.1HILLARIN
RPACG12397.1HILLARIN
RPACG12398.1HILLARIN
RPACG12399.1
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