About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2189026.1-
KAK2189027.1GLYCOPROTEIN HORMONE BETA CHAIN
KAK2189028.1UNCHARACTERIZED
KAK2189029.1MITOCHONDRIAL RIBOSOMAL PROTEIN S5
KAK2189030.1MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25
KAK2189031.1STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED
KAK2188982.1SULFITE REDUCTASE
KAK2188983.1HEAT SHOCK FACTOR 2-BINDING PROTEIN
KAK2188984.1HEAT SHOCK FACTOR 2-BINDING PROTEIN
KAK2188985.1ENHANCER OF YELLOW 2 TRANSCRIPTION FACTOR
KAK2188986.1BEIGE/BEACH-RELATED
KAK2188987.1FOLATE RECEPTOR
KAK2188988.1NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
KAK2188989.1E3 UBIQUITIN-PROTEIN LIGASE MIB2
KAK2188990.1PROTEIN EVA-1
KAK2188991.1CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
KAK2188992.1CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER
KAK2188993.1ARYLSULFATASE FAMILY MEMBER
KAK2188994.1CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN
KAK2188995.1DNA-DIRECTED RNA POLYMERASE
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