Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2181186.1 | |
| KAK2181187.1 | REGULATOR OF CHROMOSOME CONDENSATION |
| KAK2181188.1 | INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN |
| KAK2181189.1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| KAK2181190.1 | PDZ DOMAIN CONTAINING PROTEIN |
| KAK2181191.1 | SERINE/THREONINE-PROTEIN KINASE |
| KAK2181192.1 | |
| KAK2181193.1 | |
| KAK2181194.1 | |
| KAK2181195.1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
| KAK2181196.1 | WD REPEAT-CONTAINING PROTEIN 61 |
| KAK2181197.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 23 |
| KAK2181198.1 | TALIN ROD DOMAIN-CONTAINING PROTEIN 1 |
| KAK2181199.1 | ANKYRIN REPEAT PROTEIN |
| KAK2181200.1 | 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 |
| KAK2181201.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2181202.1 | |
| KAK2181203.1 | WASH COMPLEX SUBUNIT 5 |
| KAK2181204.1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| KAK2181205.1 | |
| KAK2181206.1 | VOLTAGE-GATED POTASSIUM CHANNEL |
| KAK2181207.1 | |
| KAK2181208.1 | |
| KAK2181166.1 | |
| KAK2181167.1 | |
| KAK2181168.1 | |
| KAK2181169.1 | GEO13361P1-RELATED |
| KAK2181170.1 | UNCHARACTERIZED |
| KAK2181171.1 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| KAK2181172.1 | DNA-BINDING PROTEIN SATB FAMILY MEMBER |
| KAK2181173.1 | CALCIUM BINDING PROTEIN |
| KAK2181131.1 | LEUCINE-RICH REPEAT-CONTAINING |
| KAK2181132.1 | |
| KAK2181133.1 | DNA PRIMASE LARGE SUBUNIT |
| KAK2181134.1 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1 |
| KAK2181135.1 | MYOTONIC DYSTROPHY S/T KINASE-RELATED |
| KAK2181136.1 | XK-RELATED PROTEIN |
| KAK2181137.1 | STEROL DESATURASE |
| KAK2181138.1 | |
| KAK2181139.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| KAK2181140.1 | |
| KAK2181141.1 | |
| KAK2181142.1 | |
| KAK2181143.1 | PARAOXONASE |
| KAK2181144.1 | |
| KAK2181145.1 | |
| KAK2181146.1 | PARAOXONASE |
| KAK2181147.1 | |
| KAK2181148.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2181149.1 |
