About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG11579.1
RPACG11580.1REPETIN
RPACG11581.140S RIBOSOMAL PROTEIN S6
RPACG11582.1ANKYRIN REPEAT CONTAINING
RPACG11583.1
RPACG11584.1
RPACG11585.1
RPACG11586.1
RPACG11587.1
RPACG11588.1
RPACG11589.1
RPACG11590.1
RPACG11591.1
RPACG11592.1TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATED
RPACG11592.2
RPACG11593.1UNCHARACTERIZED
RPACG11594.1
RPACG11594.2
RPACG11595.1
RPACG11596.1EXPRESSED PROTEIN
RPACG11597.1
RPACG11598.1
RPACG11599.1G-PROTEIN COUPLED RECEPTOR
RPACG11600.1
RPACG11601.1
RPACG11602.1UNCHARACTERIZED
RPACG11603.1UNCHARACTERIZED
RPACG11604.1URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
RPACG11605.1URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
RPACG11606.1URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10
RPACG11607.1
RPACG11608.1
RPACG11609.1
RPACG11610.1
RPACG11611.1
RPACG11612.1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
RPACG11613.1
RPACG11614.1GALACTOSIDE 2-L-FUCOSYLTRANSFERASE
RPACG11615.1TRANSIENT RECEPTOR POTENTIAL CHANNEL
RPACG11616.1TRANSIENT RECEPTOR POTENTIAL CHANNEL
RPACG11617.1G-PROTEIN COUPLED RECEPTOR
RPACG11618.1
RPACG11619.1
RPACG11620.1
RPACG11621.1
RPACG11622.1
RPACG11623.1
RPACG11624.1
RPACG11625.1
RPACG11626.1
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