About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG11406.1
RPACG11406.2
RPACG11406.3
RPACG11407.1
RPACG11408.1
RPACG11409.1DEATH DOMAIN-CONTAINING PROTEIN CRADD
RPACG11410.1
RPACG11411.1UNCHARACTERIZED
RPACG11412.1
RPACG11413.1UNCHARACTERIZED
RPACG11414.1ENDOPLASMIC RETICULUM PROTEIN ERP29
RPACG11415.1HISTIDINE AMMONIA-LYASE
RPACG11416.1HELICASE
RPACG11417.1
RPACG11418.1HELICASE
RPACG11419.1
RPACG11420.1HISTIDINE AMMONIA-LYASE
RPACG11421.1
RPACG11422.1TRANSDUCIN BETA-LIKE PROTEIN 2
RPACG11423.1MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINS
RPACG11424.1BREAKPOINT CLUSTER REGION PROTEIN BCR
RPACG11424.2
RPACG11424.3
RPACG11425.1FRINGE-RELATED
RPACG11426.1
RPACG11427.1
RPACG11428.1
RPACG11428.2
RPACG11429.1
RPACG11430.1
RPACG11431.1G-PROTEIN COUPLED RECEPTOR
RPACG11432.1LIPASE
RPACG11433.1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
RPACG11434.1-
RPACG11435.1DUAL SPECIFICITY PROTEIN PHOSPHATASE
RPACG11436.1
RPACG11437.1
RPACG11438.1
RPACG11439.1
RPACG11440.1
RPACG11441.1
RPACG11442.1
RPACG11443.1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
RPACG11444.1
RPACG11445.1
RPACG11446.1
RPACG11447.1
RPACG11448.1SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN
RPACG11449.1SPERM-SPECIFIC FAMILY, CLASS Q
RPACG11450.1SPERM-SPECIFIC FAMILY, CLASS Q
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