About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG11271.1
RPACG11272.1SPHINGOMYELIN PHOSPHODIESTERASE
RPACG11273.1
RPACG11274.1
RPACG11275.1
RPACG11276.1
RPACG11277.1
RPACG11278.1
RPACG11279.1CS DOMAIN-CONTAINING PROTEIN
RPACG11280.1CS DOMAIN-CONTAINING PROTEIN
RPACG11281.1
RPACG11282.1
RPACG11283.1
RPACG11284.1CS DOMAIN-CONTAINING PROTEIN
RPACG11285.1
RPACG11286.1
RPACG11286.2
RPACG11287.1CS DOMAIN-CONTAINING PROTEIN
RPACG11288.1CS DOMAIN-CONTAINING PROTEIN
RPACG11289.1
RPACG11290.1
RPACG11290.2
RPACG11290.3
RPACG11290.4
RPACG11290.5
RPACG11291.1
RPACG11292.1
RPACG11293.1CS DOMAIN-CONTAINING PROTEIN
RPACG11294.1CS DOMAIN-CONTAINING PROTEIN
RPACG11295.1
RPACG11296.1
RPACG11297.1CS DOMAIN-CONTAINING PROTEIN
RPACG11298.1CS DOMAIN-CONTAINING PROTEIN
RPACG11298.2
RPACG11299.1CS DOMAIN-CONTAINING PROTEIN
RPACG11300.1CS DOMAIN-CONTAINING PROTEIN
RPACG11301.1CS DOMAIN-CONTAINING PROTEIN
RPACG11302.1
RPACG11302.2
RPACG11302.3
RPACG11303.1
RPACG11304.1CS DOMAIN-CONTAINING PROTEIN
RPACG11305.1
RPACG11306.1
RPACG11307.1CS DOMAIN-CONTAINING PROTEIN
RPACG11308.1CS DOMAIN-CONTAINING PROTEIN
RPACG11309.1
RPACG11310.1
RPACG11311.1CS DOMAIN-CONTAINING PROTEIN
RPACG11312.1
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