Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2182318.1 | GLR0591 PROTEIN |
| KAK2182319.1 | |
| KAK2182320.1 | |
| KAK2182321.1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
| KAK2182238.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2182239.1 | - |
| KAK2182240.1 | |
| KAK2182241.1 | TRANSMEMBRANE PROTEIN 260 |
| KAK2182242.1 | - |
| KAK2182243.1 | |
| KAK2182244.1 | VACUOLAR PROTEIN SORTING 54 |
| KAK2182245.1 | VACUOLAR PROTEIN SORTING 54 |
| KAK2182246.1 | HL01030P-RELATED |
| KAK2182247.1 | RHO FAMILY GTPASE |
| KAK2182248.1 | ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN |
| KAK2182249.1 | PARTNER OF SLD5 |
| KAK2182250.1 | |
| KAK2182251.1 | MITOGEN-ACTIVATED PROTEIN KINASE-BINDING PROTEIN 1 |
| KAK2182252.1 | |
| KAK2182253.1 | PROTEIN DISPATCHED-RELATED |
| KAK2182254.1 | NUMB |
| KAK2182255.1 | NUMB |
| KAK2182256.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2182257.1 | GUANYLYL CYCLASE |
| KAK2182258.1 | GUANYLYL CYCLASE |
| KAK2182259.1 | GUANYLYL CYCLASE |
| KAK2182260.1 | |
| KAK2182261.1 | PHD FINGER PROTEIN |
| KAK2182262.1 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
| KAK2182263.1 | |
| KAK2182264.1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| KAK2182265.1 | |
| KAK2182266.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2182267.1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2182268.1 | |
| KAK2182269.1 | MONOCARBOXYLATE TRANSPORTER |
| KAK2182270.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED |
| KAK2182271.1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B'' SUBUNIT GAMMA |
| KAK2182272.1 | |
| KAK2182273.1 | INOSITOL POLYPHOSPHATE KINASE |
| KAK2182274.1 | |
| KAK2182275.1 | |
| KAK2182276.1 | PRESENILIN |
| KAK2182277.1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED |
| KAK2182278.1 | |
| KAK2182279.1 | PRESENILIN |
| KAK2182280.1 | TIGHT JUNCTION-ASSOCIATED PROTEIN 1 |
| KAK2182281.1 | |
| KAK2182282.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| KAK2182283.1 | SERINE/THREONINE PROTEIN PHOSPHATASE |
