Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2182771.1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| KAK2182772.1 | |
| KAK2182773.1 | |
| KAK2182774.1 | |
| KAK2182775.1 | |
| KAK2182776.1 | |
| KAK2182777.1 | |
| KAK2182778.1 | |
| KAK2182779.1 | SORTILIN RELATED |
| KAK2182780.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2182781.1 | ATP SYNTHASE GAMMA CHAIN |
| KAK2182782.1 | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT |
| KAK2182783.1 | PROTEIN MCM10 HOMOLOG |
| KAK2182784.1 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 |
| KAK2182785.1 | WD REPEAT-CONTAINING PROTEIN 97 |
| KAK2182786.1 | |
| KAK2182787.1 | COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER |
| KAK2182788.1 | |
| KAK2182789.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| KAK2182790.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
| KAK2182791.1 | |
| KAK2182792.1 | LD33804P |
| KAK2182793.1 | |
| KAK2182794.1 | REVERSE TRANSCRIPTASES |
| KAK2182795.1 | |
| KAK2182751.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| KAK2182752.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| KAK2182753.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| KAK2182754.1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
| KAK2182755.1 | |
| KAK2182756.1 | |
| KAK2182760.1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| KAK2182757.1 | |
| KAK2182758.1 | |
| KAK2182759.1 | |
| KAK2182761.1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
| KAK2182762.1 | PR DOMAIN ZINC FINGER PROTEIN |
| KAK2182763.1 | |
| KAK2182764.1 | DUF614 FAMILY PROTEIN-RELATED |
| KAK2182765.1 | DUF614 FAMILY PROTEIN-RELATED |
| KAK2182766.1 | DUF614 FAMILY PROTEIN-RELATED |
| KAK2182767.1 | DUF614 FAMILY PROTEIN-RELATED |
| KAK2182768.1 | DUF614 FAMILY PROTEIN-RELATED |
| KAK2182769.1 | FOUR-JOINTED BOX PROTEIN 1 |
| KAK2182733.1 | OPSIN |
| KAK2182734.1 | OPSIN |
| KAK2182735.1 | - |
| KAK2182736.1 | FOS TRANSCRIPTION FACTOR-RELATED |
| KAK2182737.1 | FOS TRANSCRIPTION FACTOR-RELATED |
| KAK2182738.1 | FOS TRANSCRIPTION FACTOR-RELATED |
