About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG09308.1PEROXISOME ASSEMBLY PROTEIN 10
RPACG09309.1DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED
RPACG09310.1SODIUM/CALCIUM EXCHANGER
RPACG09310.2
RPACG09311.1PLASMINOGEN-RELATED
RPACG09312.1
RPACG09313.1ANTIGEN 332, DBL-LIKE PROTEIN-RELATED
RPACG09313.2
RPACG09314.1
RPACG09315.1
RPACG09316.1
RPACG09317.1
RPACG09318.1
RPACG09319.1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
RPACG09320.1
RPACG09321.1UNCHARACTERIZED
RPACG09322.1FI19613P1
RPACG09323.1
RPACG09324.1
RPACG09325.1FI19613P1
RPACG09326.1AGAP012002-PA
RPACG09327.1
RPACG09328.1
RPACG09329.1
RPACG09330.1AGAP012002-PA
RPACG09331.1COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
RPACG09332.1
RPACG09333.1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
RPACG09334.1
RPACG09335.1UNCHARACTERIZED
RPACG09336.1UNCHARACTERIZED
RPACG09337.1RIM BINDING PROTEIN-RELATED
RPACG09338.1COATOMER
RPACG09339.1
RPACG09340.1
RPACG09341.1
RPACG09342.1NEUROLIGIN
RPACG09343.1NEUROLIGIN
RPACG09344.1NEUROLIGIN
RPACG09345.1
RPACG09346.1
RPACG09346.2
RPACG09346.3
RPACG09347.1
RPACG09347.2
RPACG09348.1
RPACG09349.1NEUROLIGIN
RPACG09349.2
RPACG09350.1
RPACG09351.1
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