About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG00785.3
RPACG00786.1
RPACG00786.2
RPACG00787.1
RPACG00788.1DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
RPACG00789.1TRANSKETOLASE
RPACG00789.2
RPACG00789.3
RPACG00790.1UNCHARACTERIZED
RPACG00791.1CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P
RPACG00792.1
RPACG00793.1
RPACG00794.1
RPACG00795.1TUDOR DOMAIN CONTAINING PROTEIN
RPACG00795.2
RPACG00796.1
RPACG00797.1TUDOR DOMAIN CONTAINING PROTEIN
RPACG00798.1
RPACG00799.1-
RPACG00800.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
RPACG00801.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00802.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00803.1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
RPACG00804.1
RPACG00805.1CS DOMAIN-CONTAINING PROTEIN
RPACG00806.1
RPACG00807.1
RPACG00808.1
RPACG00809.1
RPACG00810.1
RPACG00811.1
RPACG00812.1YALI0C04136P
RPACG00812.2
RPACG00812.3
RPACG00813.1
RPACG00814.1
RPACG00815.1
RPACG00816.1
RPACG00817.1
RPACG00818.1
RPACG00818.2
RPACG00819.1
RPACG00820.1
RPACG00821.1
RPACG00821.2
RPACG00822.1YALI0C04136P
RPACG00822.2
RPACG00823.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00824.1MIR DOMAIN-CONTAINING PROTEIN
RPACG00825.1DOWN REGULATED IN RENAL CARCINOMA 1/TU3A
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