About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG00752.1
RPACG00752.2
RPACG00752.3
RPACG00753.1UNCHARACTERIZED
RPACG00753.2
RPACG00754.1NHL REPEAT-CONTAINING PROTEIN-RELATED
RPACG00755.1NHL REPEAT-CONTAINING PROTEIN-RELATED
RPACG00755.2
RPACG00756.1NHL REPEAT-CONTAINING PROTEIN-RELATED
RPACG00756.2
RPACG00756.3
RPACG00757.1NHL REPEAT-CONTAINING PROTEIN-RELATED
RPACG00758.1NHL REPEAT-CONTAINING PROTEIN-RELATED
RPACG00759.1NHL REPEAT-CONTAINING PROTEIN-RELATED
RPACG00760.1UNCHARACTERIZED
RPACG00761.1TAX1 BINDING PROTEIN-RELATED
RPACG00762.1
RPACG00763.1
RPACG00764.1POLYCYSTIN FAMILY MEMBER
RPACG00765.1
RPACG00766.1DUAL SPECIFICITY PROTEIN KINASE
RPACG00767.1
RPACG00768.1
RPACG00768.2
RPACG00768.3
RPACG00768.4
RPACG00769.1F-BOX/TPR REPEAT PROTEIN POF3
RPACG00770.1TESTIS-SPECIFIC GENE 13 PROTEIN
RPACG00771.1
RPACG00772.1
RPACG00773.1UNCHARACTERIZED
RPACG00773.2
RPACG00774.1
RPACG00775.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00776.1FTP DOMAIN-CONTAINING PROTEIN
RPACG00776.2
RPACG00777.1
RPACG00778.1UNCHARACTERIZED
RPACG00779.1
RPACG00780.1
RPACG00781.1
RPACG00782.1
RPACG00783.1
RPACG00783.2
RPACG00783.3
RPACG00783.4
RPACG00783.5
RPACG00784.1
RPACG00785.1
RPACG00785.2
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