About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG07937.1
RPACG07938.1
RPACG07939.1
RPACG07940.1
RPACG07940.2
RPACG07941.1
RPACG07942.1
RPACG07943.1
RPACG07944.1
RPACG07945.1
RPACG07946.1
RPACG07947.1
RPACG07948.1
RPACG07949.1
RPACG07950.1
RPACG07951.1
RPACG07952.1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
RPACG07953.1KELCH PROTEIN
RPACG07954.1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10
RPACG07955.1YCCV-LIKE DOMAIN-CONTAINING PROTEIN
RPACG07956.1
RPACG07957.1
RPACG07957.2
RPACG07957.3
RPACG07958.1
RPACG07959.1
RPACG07959.2
RPACG07960.1CHARGED MULTIVESICULAR BODY PROTEIN
RPACG07961.1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
RPACG07962.1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
RPACG07963.1
RPACG07964.1TRYPSIN-RELATED
RPACG07964.2
RPACG07965.1
RPACG07966.1
RPACG07967.1TRANSMEMBRANE PROTEASE SERINE
RPACG07967.2
RPACG07968.1
RPACG07969.1
RPACG07970.1COLLAGEN ALPHA
RPACG07970.2
RPACG07970.3
RPACG07971.1
RPACG07972.1
RPACG07973.1MKRN2 OPPOSITE STRAND PROTEIN
RPACG07974.1INHIBITOR OF APOPTOSIS
RPACG07975.1
RPACG07976.1INHIBITOR OF APOPTOSIS
RPACG07977.1CATION EFFLUX PROTEIN/ ZINC TRANSPORTER
RPACG07977.2
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