About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG07762.1
RPACG07762.2
RPACG07763.1
RPACG07764.1
RPACG07765.1
RPACG07766.1
RPACG07767.1
RPACG07768.1
RPACG07769.1DNA-BINDING PROTEIN INHIBITOR
RPACG07770.1
RPACG07771.1
RPACG07772.1ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1
RPACG07773.1DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE
RPACG07774.1
RPACG07775.1NOTCH LIGAND FAMILY MEMBER
RPACG07776.1ALPHA-TECTORIN-RELATED
RPACG07777.1
RPACG07778.1PROPERDIN
RPACG07779.1
RPACG07780.1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
RPACG07781.1
RPACG07782.1
RPACG07783.1
RPACG07784.1
RPACG07785.1
RPACG07786.1
RPACG07786.2
RPACG07787.1
RPACG07788.1-
RPACG07788.2
RPACG07789.1PROTEIN EVA-1
RPACG07790.1COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN
RPACG07791.1
RPACG07792.1
RPACG07793.1PROTEIN EVA-1
RPACG07794.1TOL-PAL SYSTEM PROTEIN TOLA
RPACG07795.1
RPACG07796.1PROTEIN EVA-1
RPACG07797.1PROTEIN EVA-1
RPACG07798.1
RPACG07799.1HELIX LOOP HELIX PROTEIN 21-RELATED
RPACG07800.1EG:80H7.2 PROTEIN
RPACG07801.1
RPACG07802.1
RPACG07802.2
RPACG07802.3
RPACG07803.1FORKHEAD BOX PROTEIN
RPACG07804.1
RPACG07805.1SOLUTE CARRIER FAMILY 35
RPACG07806.1UPF0147 PROTEIN MJ1419
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