About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2185622.1PROTEIN EVA-1
KAK2185623.1
KAK2185624.1
KAK2185625.1PROTEIN EVA-1
KAK2185626.1
KAK2185627.1-
KAK2185628.1PROTEIN EVA-1
KAK2185629.1-
KAK2185630.1
KAK2185631.1
KAK2185632.1
KAK2185633.1
KAK2185634.1
KAK2185635.1
KAK2185636.1
KAK2185637.1
KAK2185638.1
KAK2185639.1SEPTIN
KAK2185640.1
KAK2185641.1BEIGE/BEACH-RELATED
KAK2185642.1-
KAK2185643.1-
KAK2185644.1
KAK2185645.1CELL FATE DETERMINING PROTEIN MAB21-RELATED
KAK2185646.1
KAK2185647.1SPORE COAT PROTEIN SP85
KAK2185648.1
KAK2185649.1BEIGE/BEACH-RELATED
KAK2185650.1
KAK2185651.1
KAK2185652.1
KAK2185653.1TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
KAK2185654.1
KAK2185655.1
KAK2185588.1
KAK2185589.1
KAK2185590.1
KAK2185591.1
KAK2185592.1TRANSCRIPTION FACTOR CP2
KAK2185593.1
KAK2185594.1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 12
KAK2185595.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2185596.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2185597.1
KAK2185598.1TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
KAK2185599.1INTEGRIN BETA-1-BINDING PROTEIN 1
KAK2185600.1
KAK2185601.1PROTEIN CBG11839-RELATED
KAK2185602.1TIGHT JUNCTION PROTEIN
KAK2185603.1
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