Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 1,780-2,227 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| Gene ID | Description |
|---|---|
| KAK2185954.1 | GAMETOGENETIN-BINDING PROTEIN 2 |
| KAK2185955.1 | RNA HELICASE |
| KAK2185956.1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
| KAK2185957.1 | |
| KAK2185958.1 | ZINC FINGER PROTEIN |
| KAK2185959.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| KAK2185960.1 | UNCHARACTERIZED |
| KAK2185961.1 | |
| KAK2185962.1 | ZINC FINGER, CCHC DOMAIN CONTAINING 8 |
| KAK2185963.1 | |
| KAK2185964.1 | |
| KAK2185965.1 | |
| KAK2185899.1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| KAK2185900.1 | |
| KAK2185901.1 | MACROGLOBULIN / COMPLEMENT |
| KAK2185902.1 | RING FINGER PROTEIN 32 |
| KAK2185903.1 | H2HPP ISOMERASE |
| KAK2185904.1 | UNCHARACTERIZED |
| KAK2185905.1 | F20B24.22 |
| KAK2185906.1 | |
| KAK2185907.1 | REPLICATION PROTEIN A-RELATED |
| KAK2185908.1 | DJ-1 PROTEIN |
| KAK2185909.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| KAK2185910.1 | TRANSCRIPTION ELONGATION FACTOR SPT6 |
| KAK2185911.1 | |
| KAK2185912.1 | APOPTOSIS-INDUCING FACTOR 1 |
| KAK2185913.1 | MEVALONATE KINASE |
| KAK2185914.1 | MYOSIN |
| KAK2185915.1 | |
| KAK2185916.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2185917.1 | - |
| KAK2185918.1 | |
| KAK2185919.1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
| KAK2185920.1 | - |
| KAK2185921.1 | |
| KAK2185922.1 | |
| KAK2185923.1 | |
| KAK2185924.1 | SERINE/ARGININE REPETITIVE MATRIX 2 |
| KAK2185925.1 | TRICHOPLEIN KERATIN FILAMENT-BINDING PROTEIN FAMILY MEMBER |
| KAK2185926.1 | TRNA (URACIL-5-)-METHYLTRANSFERASE |
| KAK2185927.1 | RAN BINDING PROTEIN |
| KAK2185928.1 | |
| KAK2185929.1 | |
| KAK2185930.1 | |
| KAK2185931.1 | SPINSTER |
| KAK2185932.1 | |
| KAK2185883.1 | |
| KAK2185884.1 | FI21225P1 |
| KAK2185885.1 | |
| KAK2185886.1 | POTASSIUM VOLTAGE-GATED CHANNEL SUBFAMILY KQT MEMBER 4 |
