About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2191131.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2191132.1MYOSIN
KAK2191133.126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2
KAK2191134.1COMM DOMAIN-CONTAINING PROTEIN 3
KAK2191135.1ZINC FINGER PROTEIN
KAK2191136.1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
KAK2191137.1NY-REN-41 ANTIGEN L15 -RELATED
KAK2191138.1DYNEIN HEAVY CHAIN
KAK2191139.1DYNEIN HEAVY CHAIN
KAK2191140.1DYNEIN HEAVY CHAIN
KAK2191141.1DYNEIN HEAVY CHAIN
KAK2191142.1DYNEIN HEAVY CHAIN
KAK2191143.1GEO13361P1-RELATED
KAK2191144.1-
KAK2191145.1RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
KAK2191146.1RING FINGER DOMAIN-CONTAINING, POLYCOMB GROUP COMPONENT
KAK2191091.1METALLOPROTEASE TLDD
KAK2191092.1METALLOPHOSPHOESTERASE
KAK2191093.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2191094.1INNER MEMBRANE TRANSPORT PROTEIN YAJR
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