About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894%31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2186621.1
KAK2186622.1
KAK2186623.1
KAK2186624.1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
KAK2186625.1CRUMBS FAMILY MEMBER
KAK2186626.1
KAK2186627.1ALPHA-AMYLASE FAMILY MEMBER
KAK2186628.1CRUMBS FAMILY MEMBER
KAK2186629.1PROTEIN SIDEKICK
KAK2186630.1EGF-LIKE DOMAIN-CONTAINING PROTEIN
KAK2186631.1FIBRILLIN-RELATED
KAK2186632.1
KAK2186633.1MOTOR NEURON AND PANCREAS HOMEOBOX PROTEIN
KAK2186634.1
KAK2186635.1LITHOSTATHINE
KAK2186636.1
KAK2186637.1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
KAK2186638.1
KAK2186639.1
KAK2186640.1
KAK2186641.1-
KAK2186642.1
KAK2186643.1NON-HOMOLOGOUS END-JOINING FACTOR 1
KAK2186644.1HEDGEHOG
KAK2186645.1HEDGEHOG
KAK2186646.1
KAK2186647.1
KAK2186648.1SPORE COAT PROTEIN SP85
KAK2186649.1
KAK2186650.1
KAK2186651.1
KAK2186652.1
KAK2186653.1PROTEIN CDV3 HOMOLOG
KAK2186654.1
KAK2186562.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2186563.1BUCENTAUR RELATED
KAK2186564.1
KAK2186565.1ACROSIN-RELATED
KAK2186566.1OVOCHYMASE-RELATED
KAK2186567.1OVOCHYMASE-RELATED
KAK2186568.1ACROSIN-RELATED
KAK2186569.1OVOCHYMASE-RELATED
KAK2186570.1PROTEIN EVA-1
KAK2186571.1
KAK2186572.1AF4/FMR2 FAMILY MEMBER
KAK2186573.1ZGC:174356
KAK2186574.1
KAK2186575.1ZGC:174356
KAK2186576.1
KAK2186577.1
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