About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_033040-T1-
OS493_033041-T1-
OS493_033042-T1CYTOKINE RECEPTOR
OS493_033043-T1VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL
OS493_033045-T1HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED
OS493_033046-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_033047-T1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN U FAMILY MEMBER
OS493_033048-T1AP COMPLEX SUBUNIT MU
OS493_033049-T1-
OS493_033050-T1-
OS493_033051-T1-
OS493_033052-T1-
OS493_033053-T1ZINC FINGER-CONTAINING PROTEIN P48ZNF
OS493_033054-T1-
OS493_033055-T1-
OS493_033056-T1GLYCOPROTEIN HORMONE RECEPTOR
OS493_033057-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
OS493_033058-T1COP9 SIGNALOSOME COMPLEX SUBUNIT 8
OS493_033059-T1PEROXIREDOXIN
OS493_033060-T1PROTEIN CBG20567
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