Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2187111.1 | DELETED IN ORAL CANCER 1/CDK2-ASSOCIATED PROTEIN 1 |
| KAK2187112.1 | DIPHTHINE METHYLTRANSFERASE |
| KAK2187113.1 | POLYCOMB GROUP PROTEIN |
| KAK2187114.1 | METHYLTRANSFERASE-RELATED |
| KAK2187115.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| KAK2187116.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| KAK2187117.1 | PROTEIN PM1 |
| KAK2187118.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| KAK2187119.1 | ESSENTIAL MCU REGULATOR, MITOCHONDRIAL |
| KAK2187120.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| KAK2187121.1 | |
| KAK2187122.1 | |
| KAK2187123.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2187060.1 | |
| KAK2187061.1 | RNA BINDING PROTEIN |
| KAK2187062.1 | |
| KAK2187063.1 | |
| KAK2187064.1 | CYTOPLASMIC POLYADENYLATION ELEMENT BINDING PROTEIN CPEB |
| KAK2187065.1 | PEROXISOMAL BIOGENESIS FACTOR 11 |
| KAK2187066.1 | |
| KAK2187067.1 | SYNPHILIN-1 |
| KAK2187068.1 | |
| KAK2187069.1 | RETICULOCALBIN |
| KAK2187070.1 | RETICULOCALBIN |
| KAK2187071.1 | |
| KAK2187072.1 | RADIAL SPOKE HEAD 10 HOMOLOG B-RELATED |
| KAK2187073.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| KAK2187074.1 | |
| KAK2187075.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2187076.1 | |
| KAK2187077.1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| KAK2187078.1 | |
| KAK2187079.1 | VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 |
| KAK2187080.1 | |
| KAK2187081.1 | CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2 |
| KAK2187010.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2187011.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2187012.1 | |
| KAK2187013.1 | |
| KAK2187014.1 | RIBOSOMAL PROTEIN S9 |
| KAK2187015.1 | MYOTROPHIN |
| KAK2187016.1 | PROTEIN FAM207A |
| KAK2187017.1 | |
| KAK2187018.1 | IMMUNOGLOBULIN |
| KAK2187019.1 | |
| KAK2187020.1 | |
| KAK2187021.1 | |
| KAK2187022.1 | ZINC FINGER PROTEIN 200 |
| KAK2187023.1 | |
| KAK2187024.1 |
