Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2187279.1 | |
| KAK2187280.1 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| KAK2187281.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2187282.1 | |
| KAK2187283.1 | |
| KAK2187284.1 | |
| KAK2187285.1 | |
| KAK2187286.1 | |
| KAK2187287.1 | |
| KAK2187288.1 | |
| KAK2187289.1 | TOL-PAL SYSTEM PROTEIN TOLA |
| KAK2187290.1 | |
| KAK2187291.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2187292.1 | |
| KAK2187293.1 | |
| KAK2187294.1 | |
| KAK2187295.1 | |
| KAK2187256.1 | FLAGELLAR RADIAL SPOKE PROTEIN 3 |
| KAK2187257.1 | DIGEORGE SYNDROME CRITICAL REGION 6 DGCR6 FAMILY MEMBER |
| KAK2187258.1 | PROTEIN CBG19621 |
| KAK2187259.1 | CDC37-RELATED |
| KAK2187260.1 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
| KAK2187261.1 | E3 UFM1-PROTEIN LIGASE 1 |
| KAK2187262.1 | |
| KAK2187263.1 | TESTIS-EXPRESSED PROTEIN 11 |
| KAK2187264.1 | |
| KAK2187265.1 | |
| KAK2187266.1 | - |
| KAK2187267.1 | |
| KAK2187268.1 | |
| KAK2187269.1 | FORKHEAD BOX PROTEIN O |
| KAK2187270.1 | FORKHEAD BOX PROTEIN O |
| KAK2187271.1 | BONUS, ISOFORM C-RELATED |
| KAK2187272.1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
| KAK2187273.1 | MITOCHONDRIAL ATP SYNTHASE B CHAIN |
| KAK2187274.1 | INNER CENTROMERE PROTEIN |
| KAK2187275.1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
| KAK2187276.1 | COATOMER SUBUNIT BETA |
| KAK2187277.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| KAK2187225.1 | |
| KAK2187226.1 | FOLLISTATIN-RELATED |
| KAK2187227.1 | |
| KAK2187228.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| KAK2187229.1 | |
| KAK2187230.1 | TRANSFERASE, PUTATIVE-RELATED |
| KAK2187231.1 | SODIUM-BILE ACID COTRANSPORTER |
| KAK2187232.1 | |
| KAK2187233.1 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| KAK2187234.1 | RIBONUCLEASE P_MRP PROTEIN SUBUNIT POP5 |
| KAK2187235.1 | ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED |
