Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Ridgeia piscesae | Annelida | tube worms | Hydrothermal vent | 2,196 | the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W) | 27915 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| R07B-5 | 658.2Mb | Contig | 2022 | JAODUO01 | Universite de Montreal | PRJNA786438 | 94% | 31,703 |
| ASM2569855v1 | 574.96Mb | Scaffold | 2022 | JALOCR01 | Third Institute of Oceanography, Ministry of Natural Resources, PRC | PRJNA826206 | 91.70% | 24,096 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea Polychaetes | Molecular Biology and Evolution | 37494294 |
| The genome of a vestimentiferan tubeworm (Ridgeia piscesae) provides insights into its adaptation to a deep-sea environment | BMC Genomics | 36774470 |
| Gene ID | Description |
|---|---|
| KAK2193568.1 | |
| KAK2193569.1 | |
| KAK2193570.1 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
| KAK2193571.1 | |
| KAK2193572.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2193573.1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| KAK2193574.1 | |
| KAK2193575.1 | |
| KAK2193576.1 | 3'-5' EXORIBONUCLEASE CSL4-RELATED |
| KAK2193577.1 | SIMILAR TO HYPOTHETICAL PROTEIN |
| KAK2193578.1 | PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1 PGC-1 -RELATED |
| KAK2193579.1 | |
| KAK2193580.1 | |
| KAK2193581.1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| KAK2193582.1 | |
| KAK2193583.1 | |
| KAK2193584.1 | KRAB DOMAIN C2H2 ZINC FINGER |
| KAK2193585.1 | |
| KAK2193586.1 | REVERSE TRANSCRIPTASES |
| KAK2193587.1 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| KAK2193588.1 | ADENOSINE DEAMINASE |
| KAK2193589.1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| KAK2193590.1 | AQUAPORIN TRANSPORTER |
| KAK2193591.1 | |
| KAK2193592.1 | |
| KAK2193593.1 | RETROTRANSPOSON |
| KAK2193594.1 | |
| KAK2193595.1 | |
| KAK2193596.1 | |
| KAK2193597.1 | |
| KAK2193598.1 | |
| KAK2193599.1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| KAK2193600.1 | POLY [ADP-RIBOSE] POLYMERASE |
| KAK2193601.1 | PROTOPORPHYRINOGEN OXIDASE |
| KAK2193602.1 | CHARGED MULTIVESICULAR BODY PROTEIN |
| KAK2193603.1 | POLY [ADP-RIBOSE] POLYMERASE |
| KAK2193604.1 | |
| KAK2193605.1 | UBIQUITIN-CONJUGATING ENZYME E2 |
| KAK2193606.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR-RELATED |
| KAK2193607.1 | |
| KAK2193608.1 | ZINC FINGER PROTEIN |
| KAK2193609.1 | |
| KAK2193610.1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
| KAK2193611.1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 |
| KAK2193612.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2193613.1 | |
| KAK2193614.1 | |
| KAK2193615.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2193616.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| KAK2193617.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 30 |
