About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG05315.1HOMEOBOX PROTEIN
RPACG05315.2
RPACG05316.1
RPACG05317.1HOMEOBOX PROTEIN ARISTALESS
RPACG05318.1UNNAMED PRODUCT
RPACG05319.1
RPACG05320.1
RPACG05321.1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
RPACG05322.1
RPACG05323.1SI:CH211-171H4.7-RELATED
RPACG05324.1
RPACG05325.1
RPACG05326.1
RPACG05327.1
RPACG05328.1SLEI FAMILY PROTEIN
RPACG05329.1PROTEIN CBG03580
RPACG05330.1PROTEIN CBG03580
RPACG05331.1APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR.
RPACG05332.1
RPACG05333.1TYROSINE-PROTEIN KINASE RECEPTOR
RPACG05334.1
RPACG05335.1
RPACG05336.1SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER
RPACG05337.1
RPACG05338.1
RPACG05339.1
RPACG05340.1
RPACG05341.1
RPACG05342.1
RPACG05343.1
RPACG05344.1
RPACG05345.1
RPACG05346.1
RPACG05347.1UNCHARACTERIZED
RPACG05348.1
RPACG05349.1CYCLINS
RPACG05350.1
RPACG05350.2
RPACG05351.1
RPACG05352.1
RPACG05352.2
RPACG05353.1
RPACG05354.1
RPACG05355.1
RPACG05356.1UNCHARACTERIZED
RPACG05357.1
RPACG05358.1KELCH REPEAT DOMAIN
RPACG05359.1SPLICING FACTOR SF3A-RELATED
RPACG05360.1
RPACG05361.1LEUCINE-RICH REPEAT, ISOFORM F-RELATED
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