About Riftia pachyptila

Riftia pachyptila, commonly known as the giant tube worm, is a marine invertebrate in the phylum Annelida. It inhabits hydrothermal vent ecosystems on the Pacific Ocean floor, where temperatures range from 2 to 30 °C. This species can tolerate extremely high hydrogen sulfide levels and relies entirely on symbiotic sulfur-oxidizing bacteria housed in its trophosome for nutrition. These worms can grow up to 3 meters in length, with tubular bodies reaching a diameter of 4 cm, making them one of the most iconic organisms in deep-sea vent ecosystems.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Riftia pachyptilaAnnelidaCold seep, Hydrothermal vent2,514 hydrothermal vent site Tica, East Pacific Rise (Alvin dive 4839, 9°50.398′N, 104°17.506′W)6426

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-560.7MbContig2022-University of ViennaPRJNA75449399.37%25,984
-554MbContig2023-QUEEN MARY UNIVERSITY OF LONDONPRJEB5504795.60%37,037

References
TitleJournalPubmed ID
Novel Insights on Obligate Symbiont Lifestyle and Adaptation to Chemosynthetic Environment as Revealed by the Giant Tubeworm GenomeMolecular Biology and Evolution34893862
Distinct genomic routes underlie transitions to specialised symbiotic lifestyles in deep-sea annelid wormsnature communications37198188

Gene Information

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Gene IDDescription
RPACG05271.1
RPACG05272.1
RPACG05273.1
RPACG05274.1
RPACG05275.1
RPACG05275.2
RPACG05276.1ADHESIN, PUTATIVE-RELATED
RPACG05276.2
RPACG05276.3
RPACG05277.1
RPACG05278.1HEAT SHOCK PROTEIN HSP-12.2-RELATED
RPACG05279.1HEAT SHOCK PROTEIN HSP-12.2-RELATED
RPACG05280.1
RPACG05281.1PHOSPHATIDYLETHANOLAMINE N-METHYLTRANSFERASE
RPACG05282.1
RPACG05283.1MYCBP-ASSOCIATED PROTEIN
RPACG05284.1
RPACG05285.1
RPACG05286.1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR
RPACG05287.1DNA LIGASE
RPACG05288.1AN1-TYPE ZINC FINGER PROTEIN
RPACG05289.1
RPACG05290.1LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN
RPACG05291.1OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1
RPACG05292.1
RPACG05293.1TATA-BOX BINDING PROTEIN
RPACG05293.2
RPACG05293.3
RPACG05294.1
RPACG05295.1NAD(P)H-HYDRATE EPIMERASE
RPACG05296.1
RPACG05297.1FTP DOMAIN-CONTAINING PROTEIN
RPACG05298.1
RPACG05299.1
RPACG05300.1
RPACG05301.1
RPACG05301.2
RPACG05302.1DUAL SPECIFICITY PROTEIN PHOSPHATASE
RPACG05303.1UNCHARACTERIZED
RPACG05304.1
RPACG05305.1
RPACG05306.1-
RPACG05307.1
RPACG05308.1
RPACG05309.1HILLARIN
RPACG05310.1
RPACG05311.1HILLARIN
RPACG05312.1CS DOMAIN-CONTAINING PROTEIN
RPACG05313.1
RPACG05314.1
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