About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s080.g0011.t1CALMODULIN-LYSINE N-METHYLTRANSFERASE
Lsat_s080.g0012.t1-
Lsat_s080.g0013.t1RIBOSOMAL PROTEIN S6 KINASE
Lsat_s080.g0014.t1IRON-SULFUR CLUSTER ASSEMBLY 2 HOMOLOG, MITOCHONDRIAL
Lsat_s080.g0015.t1TRNA METHYLTRANSFERASE
Lsat_s080.g0016.t1CDK-ACTIVATING KINASE ASSEMBLY FACTOR MAT1
Lsat_s080.g0017.t1FMRFAMIDE RECEPTOR-RELATED
Lsat_s080.g0018.t1-
Lsat_s080.g0019.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s080.g0020.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s080.g0021.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s080.g0022.t1HISTIDINE-RICH GLYCOPROTEIN
Lsat_s080.g0023.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s080.g0024.t1NEUROTRANSMITTER GATED ION CHANNEL
Lsat_s080.g0025.t1AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A
Lsat_s080.g0026.t1MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED
Lsat_s080.g0027.t1ACTIN
Lsat_s080.g0028.t1E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED
Lsat_s080.g0029.t1MALE FERTILITY FACTOR KL5
Lsat_s080.g0030.t1-
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