About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022269-T1WD40 REPEAT PROTEIN
OS493_022270-T1ALPHA KINASE/ELONGATION FACTOR 2 KINASE
OS493_022271-T1MITOCHONDRIA-EATING PROTEIN-RELATED
OS493_022272-T1PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN
OS493_022273-T1JITTERBUG, ISOFORM N
OS493_022274-T1JITTERBUG, ISOFORM N
OS493_022275-T1JITTERBUG, ISOFORM N
OS493_022276-T1PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
OS493_022277-T1PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN
OS493_022278-T1PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
OS493_022279-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_022280-T1MISSHAPEN LIKE KINASE 1
OS493_022281-T1MISSHAPEN LIKE KINASE 1
OS493_022282-T1AGAP010540-PA
OS493_022283-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
OS493_022284-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
OS493_022285-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3
OS493_022286-T1-
OS493_022287-T1PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1
OS493_022288-T1-
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