About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_022209-T1-
OS493_022210-T1-
OS493_022211-T1-
OS493_022212-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_022213-T1-
OS493_022214-T1RIBULOKINASE
OS493_022215-T1SPHINGOMYELIN PHOSPHODIESTERASE
OS493_022216-T1-
OS493_022217-T1BAP28
OS493_022218-T1PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG
OS493_022219-T1PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG
OS493_022220-T1-
OS493_022221-T1ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
OS493_022222-T1CYTOCHROME P450 FAMILY 4
OS493_022223-T1CYTOCHROME P450 FAMILY 4
OS493_022224-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_022225-T1-
OS493_022226-T1CENTROMERE PROTEIN C
OS493_022227-T1-
OS493_022228-T1-
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