About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_021629-T1CYCLIN
OS493_021630-T1ELONGATION FACTOR 1-GAMMA
OS493_021631-T1THUMP DOMAIN-CONTAINING
OS493_021632-T1EXPRESSED PROTEIN
OS493_021633-T1EXPRESSED PROTEIN
OS493_021634-T1DNA POLYMERASE EPSILON SUBUNIT B
OS493_021635-T1MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER
OS493_021636-T1MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER
OS493_021637-T1MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER
OS493_021638-T1MEIOTIC CHECKPOINT REGULATOR TSG24 FAMILY MEMBER
OS493_021639-T1POLYCYSTIN FAMILY MEMBER
OS493_021640-T1-
OS493_021641-T1POLYCYSTIN-1
OS493_021642-T1MULTICOPPER OXIDASE-RELATED
OS493_021643-T1-
OS493_021644-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_021645-T1GLIAL FACTOR NATURATION FACTOR
OS493_021646-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 167
OS493_021647-T1SIMILAR TO POLYHYDROXYALKANOATE DEPOLYMERASE
OS493_021648-T1PERIOSTIN-RELATED
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