Detailed information of PRJNA764822.B4

>>Metagenome>>Host>>Symbiont>>PRJNA764822.B4

Genome Characteristics
SpeciesHostGenome SizeContig CountProtein CountGC PercentageCheckM CompletenessCheckM ContaminationCheckM Strain Heterogeneity
uncultured Proteobacteria bacteriumChrysomallon squamiferum495,607 47-31.1575.272.197-

NCBI Metadata
Assembly LevelAssembly IDGenBank IDBioprojectBiosampleGenome CategoryNCBI Taxon IDIsolation Source
ContigPRJNA764822.B4-PRJNA764822-MAG1224-


Gene Information

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GeneDatabaseAnnotation IDDescriptionContigsTypeStartendStrandPartial
contig15_5KEGGK03220type III secretion protein Dcontig15CDS37714922+0
contig15_5IPRSCANIPR032030YscD, cytoplasmic domaincontig15CDS37714922+0
contig15_5PFAMPF16697Inner membrane component of T3SS, cytoplasmic domaincontig15CDS37714922+0
contig15_6KEGGK13085phosphatidylinositol-4,5-bisphosphate 4-phosphatase [EC:3.1.3.78]contig15CDS49298942+0
contig15_7EggNOGCOG0568@1|root,COG0568@2|Bacteria,1MVWR@1224|Proteobacteria,1RMFR@1236|Gammaproteobacteria,1X3U9@135614|XanthomonadalesKcontig15CDS90519866+0
contig15_7KEGGK03089RNA polymerase sigma-32 factorcontig15CDS90519866+0
contig15_7GOGO:0003700;GO:0006352;GO:0006355;DNA-binding transcription factor activity; DNA-templated transcription initiation; regulation of DNA-templated transcription;contig15CDS90519866+0
contig15_7IPRSCANIPR007627RNA polymerase sigma-70 region 2contig15CDS90519866+0
contig15_7PFAMPF04542Sigma-70 region 2contig15CDS90519866+0
contig15_8EggNOGCOG0569@1|root,COG0569@2|Bacteria,1MW8R@1224|Proteobacteria,2TRP9@28211|Alphaproteobacteria,4BPE6@82117|unclassified AlphaproteobacteriaPcontig15CDS999611402+0
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