Symbiotic Microorganism Data

Detailed information of PRJNA764822.B4

>>Metagenome>>Host>>Symbiont>>PRJNA764822.B4

Genome Characteristics

Species	Host	Genome Size	Contig Count	Protein Count	GC Percentage	CheckM Completeness	CheckM Contamination	CheckM Strain Heterogeneity
uncultured Proteobacteria bacterium	Chrysomallon squamiferum	495,607	47	-	31.15	75.27	2.197	-

NCBI Metadata

Assembly Level	Assembly ID	GenBank ID	Bioproject	Biosample	Genome Category	NCBI Taxon ID	Isolation Source
Contig	PRJNA764822.B4	-	PRJNA764822	-	MAG	1224	-

Gene Information

<< First 105 106 107 108 109 110 111 112 113 114 Forward> Last>> 154 pages in total

Gene	Database	Annotation ID	Description	Contigs	Type	Start	end	Strand	Partial
contig34_27	PFAM	PF01311	Bacterial export proteins, family 1	contig34	CDS	24520	25332	-	0
contig34_28	EggNOG	COG4794@1\|root,COG4794@2\|Bacteria,1N6RK@1224\|Proteobacteria,1SD82@1236\|Gammaproteobacteria,1XMVB@135619\|Oceanospirillales	U	contig34	CDS	25334	25594	-	0
contig34_28	KEGG	K03227	type III secretion protein S	contig34	CDS	25334	25594	-	0
contig34_28	GO	GO:0009306;GO:0016020;	protein secretion; membrane;	contig34	CDS	25334	25594	-	0
contig34_28	IPRSCAN	IPR002191	Bacterial export protein family 3	contig34	CDS	25334	25594	-	0
contig34_28	PFAM	PF01313	Bacterial export proteins, family 3	contig34	CDS	25334	25594	-	0
contig34_29	EggNOG	COG4790@1\|root,COG4790@2\|Bacteria,1R34E@1224\|Proteobacteria,1RZR2@1236\|Gammaproteobacteria	U	contig34	CDS	25613	26266	-	0
contig34_29	KEGG	K03226	type III secretion protein R	contig34	CDS	25613	26266	-	0
contig34_29	GO	GO:0009306;GO:0016020;	protein secretion; membrane;	contig34	CDS	25613	26266	-	0
contig34_29	IPRSCAN	IPR005838	Type III secretion system inner membrane P protein	contig34	CDS	25613	26266	-	0

TOP

Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.