Symbiotic Microorganism Data

Detailed information of PRJNA764822.B3

>>Metagenome>>Host>>Symbiont>>PRJNA764822.B3

Genome Characteristics

Species	Host	Genome Size	Contig Count	Protein Count	GC Percentage	CheckM Completeness	CheckM Contamination	CheckM Strain Heterogeneity
uncultured Gammaproteobacteria bacterium	Chrysomallon squamiferum	1,672,431	171	-	39.65	98.54	0.883	-

NCBI Metadata

Assembly Level	Assembly ID	GenBank ID	Bioproject	Biosample	Genome Category	NCBI Taxon ID	Isolation Source
Contig	PRJNA764822.B3	-	PRJNA764822	-	MAG	1913989	-

Gene Information

<< First 521 522 523 524 525 526 527 528 529 530 Forward> Last>> 636 pages in total

Gene	Database	Annotation ID	Description	Contigs	Type	Start	end	Strand	Partial
contig68_25	IPRSCAN	IPR002792	TRAM domain	contig68	CDS	19288	19485	-	1
contig68_25	PFAM	PF01938	TRAM domain	contig68	CDS	19288	19485	-	1
contig68_3	EggNOG	COG5464@1\|root,COG5464@2\|Bacteria,1G211@1117\|Cyanobacteria,1H8YW@1150\|Oscillatoriales	S	contig68	CDS	1833	2690	-	0
contig68_3	KEGG	K24090	recombination-promoting nuclease RpnE	contig68	CDS	1833	2690	-	0
contig68_3	IPRSCAN	-	-	contig68	CDS	1833	2690	-	0
contig68_3	PFAM	PF12784	PD-(D/E)XK nuclease family transposase	contig68	CDS	1833	2690	-	0
contig68_4	EggNOG	COG0324@1\|root,COG0324@2\|Bacteria,1MUB2@1224\|Proteobacteria,1RMDU@1236\|Gammaproteobacteria,1J4T1@118884\|unclassified Gammaproteobacteria	F	contig68	CDS	2832	3752	-	0
contig68_4	KEGG	K00791	tRNA dimethylallyltransferase [EC:2.5.1.75]	contig68	CDS	2832	3752	-	0
contig68_4	IPRSCAN	-	-	contig68	CDS	2832	3752	-	0
contig68_4	PFAM	PF01715	IPP transferase	contig68	CDS	2832	3752	-	0

TOP

Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
© 2024 All Rights Reserved.