Symbiotic Microorganism Data

Detailed information of PRJNA764822.B3

>>Metagenome>>Host>>Symbiont>>PRJNA764822.B3

Genome Characteristics

Species	Host	Genome Size	Contig Count	Protein Count	GC Percentage	CheckM Completeness	CheckM Contamination	CheckM Strain Heterogeneity
uncultured Gammaproteobacteria bacterium	Chrysomallon squamiferum	1,672,431	171	-	39.65	98.54	0.883	-

NCBI Metadata

Assembly Level	Assembly ID	GenBank ID	Bioproject	Biosample	Genome Category	NCBI Taxon ID	Isolation Source
Contig	PRJNA764822.B3	-	PRJNA764822	-	MAG	1913989	-

Gene Information

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Gene	Database	Annotation ID	Description	Contigs	Type	Start	end	Strand	Partial
contig21_73	GO	GO:0016151;	nickel cation binding;	contig21	CDS	68031	69845	-	0
contig21_73	IPRSCAN	IPR001501	Nickel-dependent hydrogenase, large subunit	contig21	CDS	68031	69845	-	0
contig21_73	PFAM	PF00374	Nickel-dependent hydrogenase	contig21	CDS	68031	69845	-	0
contig21_74	EggNOG	COG1740@1\|root,COG1740@2\|Bacteria,1MWAC@1224\|Proteobacteria,1RNTJ@1236\|Gammaproteobacteria	C	contig21	CDS	69848	70966	-	0
contig21_74	KEGG	K06282	hydrogenase small subunit [EC:1.12.99.6]	contig21	CDS	69848	70966	-	0
contig21_74	IPRSCAN	IPR027394	Cytochrome-c3 hydrogenase, C-terminal	contig21	CDS	69848	70966	-	0
contig21_74	PFAM	PF14720	NiFe/NiFeSe hydrogenase small subunit C-terminal	contig21	CDS	69848	70966	-	0
contig21_75	EggNOG	COG1508@1\|root,COG1508@2\|Bacteria,2G3YH@200783\|Aquificae	K	contig21	CDS	71055	72314	+	0
contig21_75	KEGG	K03092	RNA polymerase sigma-54 factor	contig21	CDS	71055	72314	+	0
contig21_75	GO	GO:0001216;	DNA-binding transcription activator activity;	contig21	CDS	71055	72314	+	0

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Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering
Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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