About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40%57,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides00001SPHINGOMYELIN SYNTHETASE
Paelopatides00002
Paelopatides00003TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE
Paelopatides00004
Paelopatides00005HISTONE ACETYLTRANSFERASE
Paelopatides00006CADHERIN DOMAIN-CONTAINING PROTEIN
Paelopatides00007WD40 REPEAT PROTEIN
Paelopatides00008PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides00009
Paelopatides00010CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides00011SOLUTE CARRIER FAMILY 25
Paelopatides00012DPY30-RELATED
Paelopatides0001354S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL
Paelopatides00014DNAJ HOMOLOG SUBFAMILY C MEMBER 12
Paelopatides00015NUCLEAR FACTOR NF-KAPPA-B PROTEIN
Paelopatides00016NUCLEAR FACTOR NF-KAPPA-B PROTEIN
Paelopatides00017LONG-CHAIN-FATTY-ACID--COA LIGASE
Paelopatides00018REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides00020
Paelopatides00021
Paelopatides00022TRANSMEMBRANE 9 SUPERFAMILY PROTEIN
Paelopatides00023
Paelopatides00024DUF614 FAMILY PROTEIN-RELATED
Paelopatides00025ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides00026PROTEIN CBG26694
Paelopatides00027
Paelopatides00028RIBOSOMAL PROTEIN S6 KINASE
Paelopatides00029PROTEIN CBG26694
Paelopatides00030
Paelopatides00031L-ASPARAGINASE
Paelopatides00032WSCD FAMILY MEMBER CG9164
Paelopatides00033
Paelopatides00034ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides00035
Paelopatides00037
Paelopatides00038ENZYMATIC POLYPROTEIN-RELATED
Paelopatides00039ENDONUCLEASE-RELATED
Paelopatides00040
Paelopatides00041DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN
Paelopatides00042TETRASPANIN
Paelopatides00043CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
Paelopatides00044ANTIGEN BSP, PUTATIVE-RELATED
Paelopatides00045CRUMBS FAMILY MEMBER
Paelopatides00046GENERAL TRANSCRIPTION FACTOR II-I REPEAT DOMAIN-CONTAINING PROTEIN 2
Paelopatides00047CRUMBS FAMILY MEMBER
Paelopatides00048
Paelopatides00049POL PROTEIN
Paelopatides00050BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides00051TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides00052PROTEIN CBG26694
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