About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_000001-T1
OS493_000002-T1
OS493_000003-T1SI:DKEY-29D5.2
OS493_000004-T1
OS493_000005-T1DESMOGLEIN FAMILY MEMBER
OS493_000006-T1FAT ATYPICAL CADHERIN-RELATED
OS493_000007-T1
OS493_000008-T1MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED
OS493_000009-T1UNCHARACTERIZED
OS493_000010-T1PATCHED-RELATED
OS493_000011-T1
OS493_000012-T1
OS493_000013-T1
OS493_000014-T1NF-KAPPA-B INHIBITOR-INTERACTING RAS-LIKE PROTEIN
OS493_000015-T1(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
OS493_000016-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_000017-T1
OS493_000018-T1
OS493_000019-T1FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
OS493_000020-T1FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE
OS493_000021-T1GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN
OS493_000022-T1GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN
OS493_000023-T1CYSTEINE AND HISTIDINE-RICH DOMAIN-CONTAINING PROTEIN 1
OS493_000024-T1TUBULIN POLYGLUTAMYLASE
OS493_000025-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 58
OS493_000026-T1EXPRESSED PROTEIN
OS493_000027-T1EUKARYOTIC ELONGATION FACTOR 2 KINASE-RELATED
OS493_000028-T1EXPRESSED PROTEIN
OS493_000029-T1RNA HELICASE
OS493_000030-T1
OS493_000031-T1
OS493_000032-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_000033-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_000034-T1AMMONIUM TRANSPORTER
OS493_000035-T1AMMONIUM TRANSPORTER
OS493_000036-T1UNCHARACTERIZED
OS493_000037-T1BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
OS493_000038-T1POLYPHOSPHOINOSITIDE PHOSPHATASE
OS493_000039-T1
OS493_000040-T1
OS493_000041-T1MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO
OS493_000042-T1
OS493_000043-T1
OS493_000044-T1SERINE/ARGININE REGULATED NUCLEAR MATRIX PROTEIN
OS493_000045-T1SURFEIT LOCUS PROTEIN 6
OS493_000046-T1INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG
OS493_000047-T1INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG
OS493_000048-T1
OS493_000049-T1RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1
OS493_000050-T1
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