Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI7988508.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| CAI7988511.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| CAI7988510.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| CAI7988509.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| CAI7988513.1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED |
| CAI7988519.1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
| CAI7988518.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI7988517.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI7988516.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7988515.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7988524.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7988522.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI7988520.1 | KH DOMAIN CONTAINING RNA BINDING PROTEIN |
| CAI7988526.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI7988514.1 | |
| CAI7988528.1 | |
| CAI7988530.1 | CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) |
| CAI7988532.1 | UNCHARACTERIZED |
| CAI7988534.1 | |
| CAI7988536.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI7988538.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S31 |
| CAI7988540.1 | |
| CAI7988548.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988546.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988544.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988542.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988550.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988552.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988554.1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
| CAI7988556.1 | CENTROMERE PROTEIN W |
| CAI7988558.1 | |
| CAI7988577.1 | |
| CAI7988579.1 | |
| CAI7988581.1 | |
| CAI7988583.1 | |
| CAI7988585.1 | |
| CAI7988587.1 | |
| CAI7988589.1 | |
| CAI7988591.1 | NETRIN/LAMININ-RELATED |
| CAI7988593.1 | NETRIN/LAMININ-RELATED |
| CAI7988595.1 | NETRIN/LAMININ-RELATED |
| CAI7988597.1 | UNCHARACTERIZED |
| CAI7988600.1 | UNCHARACTERIZED |
| CAI7988603.1 | |
| CAI7988605.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI7988607.1 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| CAI7988609.1 | |
| CAI7988617.1 | |
| CAI7988615.1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
| CAI7988619.1 | ABHYDROLASE DOMAIN-CONTAINING PROTEIN |
