About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_020941-T1BONUS, ISOFORM C-RELATED
OS493_020942-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_020943-T1-
OS493_020944-T1-
OS493_020945-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_020946-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
OS493_020947-T1-
OS493_020948-T1-
OS493_020949-T1-
OS493_020950-T1MYOTROPHIN
OS493_020951-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
OS493_020952-T1CHONDROITIN SYNTHASE
OS493_020953-T1CHONDROITIN SYNTHASE
OS493_020954-T1CHONDROITIN SYNTHASE
OS493_020955-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 27
OS493_020956-T1ANTHRAX TOXIN RECEPTOR
OS493_020957-T1GLUTAMATE 5-KINASE
OS493_020958-T1MYOSIN REGULATORY LIGHT CHAIN 2
OS493_020959-T1FUKUTIN RELATED PROTEIN
OS493_020960-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL BETA SUBUNIT
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