About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2174922.1CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS
KAK2174923.130S/40S RIBOSOMAL PROTEIN S4
KAK2174924.1ZINC FINGER PROTEIN ZIC AND GLI
KAK2174925.1DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
KAK2174926.1SULFOTRANSFERASE SULT
KAK2174927.1-
KAK2174928.1ZINC FINGER C4H2 DOMAIN-CONTAINING PROTEIN
KAK2174899.1-
KAK2174900.1COILED-COIL DOMAIN-CONTAINING PROTEIN 189
KAK2174901.1ES1 PROTEIN HOMOLOG, MITOCHONDRIAL
KAK2174902.1UNCHARACTERIZED
KAK2174903.1DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
KAK2174904.1DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
KAK2174905.130S RIBOSOMAL PROTEIN S18
KAK2174906.1MRNA EXPORT FACTOR AND BUB3
KAK2174907.1PROTEIN CBG26694
KAK2174908.1PROTEIN CBG26694
KAK2174909.1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
KAK2174910.1TRANSFERRIN
KAK2174911.1F-BOX ONLY PROTEIN 33
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