About Ridgeia piscesae

Ridgeia piscesae is a tube worm found in a variety of environments on the Juan de Fuca Ridge. Found in clusters up to several square meters in area, these Polychaete’s lack a digestive tract, instead taking up organic carbon from symbiotic, chemoautotrophic bacteria found in their specially-evolved trophosomes. These bacteria oxidize sulfur in order to create organic material. Initially thought to be several species of the Ridgeia genus on the Juan de Fuca Ridge, genetic comparison showed that only one species existed, with various morphologies. The two extreme morphologies are the so-called long-skinny and fat-short forms.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Ridgeia (Genus); Ridgeia piscesae (Species)

Original Name

Ridgeia piscesae Jones, 1985

Key Reference Paper

1. Jones M L. On the Vestimentifera, new phylum: six new species, and other taxa, from hydrothermal vents and elsewhere[J]. Bull Biol Soc Wash, 1985, 6: 117. (Jones et al., 1985)
2. Southward E C, Tunnicliffe V, Black M. Revision of the species of Ridgeia from northeast Pacific hydrothermal vents, with a redescription of Ridgeia piscesae Jones (Pogonophora: Obturata= Vestimentifera)[J]. Canadian Journal of zoology, 1995, 73(2): 282-295. (Southward et al., 1995)

Distribution

Shepherd's Vent, Axial Seamount, Juande Fuca Ridge. Hydrothermal vents of Juan de Fuca Ridgeand northern Gorda Ridge


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Ridgeia piscesaeAnnelidatube wormsHydrothermal vent1,780-2,227the Juan de Fuca Ridge (47°57.00′ N, 129°5.82′ W)27915

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
R07B-5658.2MbContig2022JAODUO01Universite de MontrealPRJNA78643894.00 365.441-31,703

References
TitleJournalPubmed ID
Third-Generation Sequencing Reveals the Adaptive Role of the Epigenome in Three Deep-Sea PolychaetesMolecular Biology and Evolution37494294

Gene Information

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Gene IDDescription
KAK2175855.1WD REPEAT DOMAIN-RELATED
KAK2175856.1-
KAK2175857.1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT
KAK2175858.1EXOSOME COMPLEX COMPONENT
KAK2175859.1-
KAK2175860.1-
KAK2175861.1-
KAK2175862.1NUCLEAR RECEPTOR COACTIVATOR
KAK2175863.1TRANSFERASE, PUTATIVE-RELATED
KAK2175864.1POLY A POLYMERASE CID PAP -RELATED
KAK2175865.1POLY A POLYMERASE CID PAP -RELATED
KAK2175866.1THIAMIN PYROPHOSPHOKINASE
KAK2175867.1FAST LEU-RICH DOMAIN-CONTAINING
KAK2175868.1NON-SPECIFIC LETHAL 1, ISOFORM M
KAK2175869.1NON-SPECIFIC LETHAL 1, ISOFORM M
KAK2175835.1N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER
KAK2175836.1SIMILAR TO HYPOTHETICAL PROTEIN
KAK2175837.1STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE
KAK2175838.1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
KAK2175839.1-
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