About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_018838-T1TRANSPORTIN 3 AND IMPORTIN 13
OS493_018839-T1TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1
OS493_018840-T1TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1
OS493_018841-T1CENTROSOMAL PROTEIN OF 290 KDA
OS493_018842-T1-
OS493_018843-T1TWO PORE CALCIUM CHANNEL PROTEIN 2
OS493_018844-T1TWO PORE CALCIUM CHANNEL PROTEIN 2
OS493_018845-T1TWO PORE CALCIUM CHANNEL PROTEIN 2
OS493_018846-T1CYCLIC AMP RESPONSE ELEMENT-BINDING PROTEIN A
OS493_018847-T1CYCLINS
OS493_018848-T1-
OS493_018849-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_018850-T1RHO GTPASE-ACTIVATING PROTEIN 68F
OS493_018851-T1ZINC FINGER PROTEIN 593
OS493_018852-T1-
OS493_018853-T1-
OS493_018855-T1-
OS493_018856-T1-
OS493_018857-T1TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12
OS493_018858-T1TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12
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