About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017961-T1-
OS493_017962-T1FASCIN
OS493_017963-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_017964-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_017965-T1-
OS493_017966-T1-
OS493_017967-T1-
OS493_017968-T1METALLOPROTEASE
OS493_017969-T1ZINC FINGER PROTEIN 598
OS493_017970-T1UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED
OS493_017971-T140S RIBOSOMAL PROTEIN SA
OS493_017972-T1ECSIT EVOLUTIONARILY CONSERVED SIGNALING INTERMEDIATE IN TOLL PATHWAYS
OS493_017973-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_017974-T1PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN
OS493_017975-T1WW DOMAIN-BINDING PROTEIN 11
OS493_017976-T1M-AAA PROTEASE-INTERACTING PROTEIN 1, MITOCHONDRIAL
OS493_017977-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017978-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_017979-T1-
OS493_017980-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
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