About Lamellibrachia columna

Lamellibrachia columna is a species of tube worm in the family Siboglinidae, found in deep-sea hydrothermal vents and cold seep ecosystems. This species thrives in extreme environments by relying on a symbiotic relationship with sulfide-oxidizing bacteria housed in its trophosome, a specialized organ. These bacteria convert hydrogen sulfide into organic compounds, providing the worm with essential nutrients. Lamellibrachia columna plays a vital role in deep-sea ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia columna (Species)

Original Name

Lamellibrachia columna Southward, 1991

Key Reference Paper

1. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Southward et al., 1991)
2. Southward E C. Three new species of Pogonophora, including two vestimentiferans, from hydrothermal sites in the Lau Back-arc Basin (Southwest Pacific Ocean)[J]. Journal of Natural History, 1991, 25(4): 859-881. (Kobayashi et al., 2015)

Description

Tube length 277.0–661.5 mm (mean=545.7 mm, n=4); outer width of top funnel opening 9.5–11.2 mm (n=4); width of basal end 2.8–7.8 mm (mean=4.5 mm, n=4). All tubes incomplete, lacking considerable parts of basal regions. External characters of tube variable along its length.Anterior part straight or slightly curved, but not coiled, with many short collars. Inter-collar distance generally small but varying among specimens. Posterior part sinuous, curled, smooth, without collars.

Etymology

The specific epithet sagami,asnoun in apposition, refers to the province name of the Edo period for Kanagawa, the coastal area of Sagami Bay, the type locality

Distribution

The species is known from cold seep areas off Hatsushima and on the Okinoyama Bank, Sagami Bay, the Kanesu-no-se Bank, the Ryuyo Canyon, the Omaezaki Spur and the Tenryu Knoll, the Nankai Trough, and the Kuroshima Knoll, the Ryukyu Trench between 270–1300 m. It is also known from hydrothermal vent fields on the Iheya Ridge and the North Iheya Knoll, the Okinawa Trough, and the Sumisu Caldera, the Izu-Bonin arc between 900–1500 m depth


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia columnaAnnelida-Cold seep810-1,870cold seeps off the east coast of the North Island of New Zealand53616

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
wsLamColu1.1879.7MbChromosome2023CAVLEN01WELLCOME SANGER INSTITUTEPRJEB6835397.30 472.9/472.540.5-32,318

Gene Information

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Gene IDDescription
ENSZWYP00000016402.1EXPRESSED PROTEIN
ENSZWYP00000016403.1-
ENSZWYP00000016404.1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG
ENSZWYP00000016405.1-
ENSZWYP00000016406.1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
ENSZWYP00000016407.1PROTEIN BARK BEETLE
ENSZWYP00000016408.1-
ENSZWYP00000016409.1GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1
ENSZWYP00000016410.1HEMOGLOBINASE FAMILY MEMBER
ENSZWYP00000016411.1BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
ENSZWYP00000016412.1CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG
ENSZWYP00000016413.1CARBON CATABOLITE REPRESSOR PROTEIN 4
ENSZWYP00000016414.1RAB FAMILY
ENSZWYP00000016415.139S RIBOSOMAL PROTEIN L45, MITOCHONDRIAL
ENSZWYP00000016416.1PHOSPHATIDYLSERINE DECARBOXYLASE
ENSZWYP00000016417.1TRANSLOCON-ASSOCIATED PROTEIN, DELTA SUBUNIT
ENSZWYP00000016418.1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
ENSZWYP00000016419.1PHOSPHATIDYLSERINE DECARBOXYLASE
ENSZWYP00000016420.1RAB FAMILY
ENSZWYP00000016421.1SALVADOR FAMILY WW DOMAIN-CONTAINING PROTEIN 1
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