About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

<< First 809 810 811 812 813 814 815 816 817 818 Forward> Last>>        1875 pages in total

Gene IDDescription
OS493_017539-T1DEOXYCYTIDYLATE DEAMINASE-RELATED
OS493_017540-T1PDZ AND LIM DOMAIN PROTEIN ZASP
OS493_017541-T1-
OS493_017542-T1-
OS493_017543-T1OXIDASE/PEROXIDASE
OS493_017544-T1OXIDASE/PEROXIDASE
OS493_017545-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_017546-T1G PROTEIN-COUPLED RECEPTOR
OS493_017547-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_017548-T1GEM-ASSOCIATED PROTEIN 5
OS493_017549-T1GEM-ASSOCIATED PROTEIN 5
OS493_017550-T1CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED
OS493_017551-T1CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
OS493_017552-T1CYTOPLASMIC FMR1-INTERACTING PROTEIN-RELATED
OS493_017553-T1BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR
OS493_017554-T1-
OS493_017555-T1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
OS493_017556-T1-
OS493_017557-T1-
OS493_017558-T1MONOCARBOXYLATE TRANSPORTER
TOP