About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_017075-T1PROTEIN DD3-3
OS493_017076-T1PROTEIN DD3-3
OS493_017077-T1PROTEIN DD3-3
OS493_017078-T1ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER
OS493_017080-T1PROTEIN DD3-3
OS493_017081-T1PA-PL1 PHOSPHOLIPASE FAMILY
OS493_017082-T1PA-PL1 PHOSPHOLIPASE FAMILY
OS493_017083-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
OS493_017084-T1-
OS493_017085-T1NITRIC OXIDE-ASSOCIATED PROTEIN 1
OS493_017086-T1-
OS493_017087-T1-
OS493_017088-T1-
OS493_017089-T1-
OS493_017090-T1-
OS493_017091-T1CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1
OS493_017092-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_017093-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_017094-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_017095-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
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