About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016911-T1GLYCOSYLTRANSFERASE
OS493_016912-T1ACYL-COENZYME A SYNTHETASE
OS493_016913-T1ACYL-COENZYME A SYNTHETASE
OS493_016914-T1G9A, ISOFORM B
OS493_016915-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_016916-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_016917-T1SACSIN
OS493_016918-T1ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
OS493_016919-T1METALLOPROTEASE TLDD
OS493_016920-T1PRESEQUENCE PROTEASE
OS493_016921-T1-
OS493_016922-T1SYNAPTOTAGMIN
OS493_016923-T1SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
OS493_016924-T1QUINONE OXIDOREDUCTASE PIG3-RELATED
OS493_016925-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_016926-T1-
OS493_016927-T1COLLAGEN ALPHA
OS493_016928-T1-
OS493_016929-T1-
OS493_016930-T1OS03G0856100 PROTEIN
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