About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_016481-T1OXIDOREDUCTASE HTATIP2
OS493_016483-T1NUCLEAR HORMONE RECEPTOR
OS493_016485-T1-
OS493_016486-T1LD44762P
OS493_016487-T1APOSPORY-ASSOCIATED PROTEIN C-RELATED
OS493_016488-T1UBIQUILIN
OS493_016489-T1-
OS493_016490-T1-
OS493_016491-T1RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
OS493_016492-T1SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
OS493_016493-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 15
OS493_016494-T1SURVIVAL MOTOR NEURON-LIKE PROTEIN 1
OS493_016495-T1SURVIVAL MOTOR NEURON-LIKE PROTEIN 1
OS493_016496-T1PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED
OS493_016497-T1DNA-DIRECTED RNA POLYMERASE III
OS493_016498-T1COLLAGEN ALPHA
OS493_016499-T1SPINAL CORD EXPRESSION PROTEIN 4
OS493_016500-T1MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM44
OS493_016501-T1RNA LARIAT DEBRANCHING ENZYME
OS493_016502-T1RNA-BINDING PROTEIN 8A
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